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Mettu_2483 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_2483" - RNA polymerase sigma-54 factor in Methylobacter tundripaludum
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
Mettu_2483RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (481 aa)    
Predicted Functional Partners:
Mettu_1815
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG- nhl-Nhal_0598 sigma-54 factor interaction domain-containing protein; PFAM- RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART- Signal transduction response regulator, receiver region; ATPase, AAA+ type, core (447 aa)
 
   
  0.943
Mettu_3852
Multi-sensor hybrid histidine kinase; TIGRFAM- PAS; PFAM- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold-4; Signal transduction response regulator, receiver region; KEGG- bxe-Bxe_B1311 PAS/PAC sensor hybrid histidine kinase; SMART- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; Signal transduction response regulator, receiver region (872 aa)
   
 
  0.917
rpoS
KEGG- alv-Alvin_0780 RNA polymerase sigma-70 subunit RpoD subfamily; TIGRFAM- RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM- RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 (342 aa)
         
  0.907
Mettu_3662
Sigma54 specific transcriptional regulator, Fis family; KEGG- amc-MADE_02894 polar flagellar protein FlaK; PFAM- RNA polymerase sigma factor 54, interaction; Flagellar regulatory FleQ; Helix-turn-helix, Fis-type; SMART- ATPase, AAA+ type, core (483 aa)
 
   
  0.897
Mettu_4310
Multi-sensor signal transduction histidine kinase; TIGRFAM- PAS; PFAM- ATP-binding region, ATPase-like; MHYT; PAS fold; KEGG- dar-Daro_0971 PAS; SMART- ATP-binding region, ATPase-like; PAS; PAC motif (907 aa)
   
 
  0.895
Mettu_1183
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family; TIGRFAM- Signal transduction response regulator, nitrogen regulation NR(I); PFAM- RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG- mca-MCA2541 nitrogen regulation protein NR(I); SMART- Signal transduction response regulator, receiver region; ATPase, AAA+ type, core (471 aa)
 
   
  0.895
Mettu_3660
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG- sdn-Sden_1322 sigma-54 factor, interaction region; PFAM- RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART- Signal transduction response regulator, receiver region; ATPase, AAA+ type, core (468 aa)
 
   
  0.885
Mettu_1012
Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG- nhl-Nhal_3135 sigma-54 factor interaction domain-containing protein; PFAM- RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART- Signal transduction response regulator, receiver region; ATPase, AAA+ type, core (490 aa)
 
   
  0.883
Mettu_2484
KEGG- alv-Alvin_2848 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM- Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM- Ribosomal protein S30Ae/sigma 54 modulation protein (96 aa)
   
   
  0.833
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1397 aa)
       
 
  0.818
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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