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rnr protein (Methylobacter tundripaludum) - STRING interaction network
"rnr" - Ribonuclease R in Methylobacter tundripaludum
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rnrRibonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (746 aa)    
Predicted Functional Partners:
rnd
Ribonuclease D ; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides (389 aa)
     
  0.963
rph
tRNA nucleotidyltransferase ; Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (345 aa)
     
  0.958
rlmB
23S rRNA Gm2251 2’-O-methyltransferase ; Specifically methylates the ribose of guanosine 2251 in 23S rRNA (248 aa)
   
    0.955
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (161 aa)
       
  0.951
Mettu_0754
CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase (187 aa)
       
      0.936
pcnB
Poly(A) polymerase I ; Adds poly(A) tail to the 3’ end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control (467 aa)
   
 
  0.850
Mettu_3848
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (319 aa)
   
 
  0.800
rlmL
Ribosomal RNA large subunit methyltransferase K/L ; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA (774 aa)
   
      0.763
metG
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (672 aa)
 
   
  0.730
Mettu_0078
Mutator MutT protein (307 aa)
   
  0.729
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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