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STRINGSTRING
lptE protein (Methylobacter tundripaludum) - STRING interaction network
"lptE" - LPS-assembly lipoprotein LptE in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
lptELPS-assembly lipoprotein LptE; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane (165 aa)    
Predicted Functional Partners:
lptD
LPS-assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (985 aa)
 
 
  0.958
Mettu_2688
TIGRFAM- DNA polymerase III, delta subunit; KEGG- cja-CJA_0452 DNA polymerase III subunit delta; PFAM- DNA polymerase III, delta (337 aa)
 
   
  0.926
Mettu_2788
KEGG- nwa-Nwat_1289 hypothetical protein (902 aa)
     
  0.798
leuS
Leucine--tRNA ligase; TIGRFAM- Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG- tgr-Tgr7_2279 leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family (832 aa)
   
   
  0.729
Mettu_2480
PFAM- Protein of unknown function DUF1239; KEGG- mca-MCA0744 hypothetical protein (189 aa)
    
   
  0.686
Mettu_2482
Molybdate-transporting ATPase; PFAM- ABC transporter-like; KEGG- mca-MCA0742 ABC transporter, ATP-binding protein; SMART- ATPase, AAA+ type, core (261 aa)
          
  0.622
Mettu_2536
PFAM- Permease YjgP/YjgQ, predicted; KEGG- mca-MCA2101 hypothetical protein; overlaps another CDS with the same product name (357 aa)
      
  0.604
Mettu_2467
TIGRFAM- Conserved hypothetical protein CHP02099; KEGG- mca-MCA0380 hypothetical protein (1333 aa)
 
          0.573
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm (184 aa)
      
  0.536
Mettu_1836
Sporulation domain-containing protein; PFAM- Sporulation/cell division region, bacteria; KEGG- tgr-Tgr7_0262 hypothetical protein (198 aa)
    
   
  0.511
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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