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STRINGSTRING
Mettu_2700 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_2700" - PFAM: Protein of unknown function DUF2133 in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_2700PFAM- Protein of unknown function DUF2133; KEGG- mca-MCA2890 hypothetical protein (213 aa)    
Predicted Functional Partners:
bamB
Outer membrane protein assembly factor BamB; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (416 aa)
 
  0.990
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis (465 aa)
 
   
  0.965
hisS
Histidine--tRNA ligase; KEGG- maq-Maqu_1128 histidyl-tRNA synthetase; manually curated; TIGRFAM- Histidyl-tRNA synthetase, class IIa, subgroup; PFAM- Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Anticodon-binding; HAMAP- Histidyl-tRNA synthetase, class IIa, subgroup (424 aa)
 
        0.965
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation (125 aa)
   
        0.751
Mettu_1392
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins (161 aa)
 
        0.728
Mettu_2698
KEGG- mca-MCA2888 type IV pilus biogenesis protein PilF, putative; TIGRFAM- Pilus biogenesis/stability type IV, PilW; PFAM- Tetratricopeptide TPR2; Tetratricopeptide TPR-1 (253 aa)
 
        0.624
Mettu_2182
Thiol-disulfide interchange protein; PFAM- DSBA oxidoreductase; KEGG- mca-MCA2602 thiol-disulfide interchange protein DsbA (206 aa)
   
 
 
  0.619
Mettu_0171
PFAM- Stringent starvation protein B; KEGG- mca-MCA1958 ClpXP protease specificity-enhancing factor (125 aa)
   
          0.599
Mettu_3545
Protein TolA; TIGRFAM- Tol-Pal system, TolA; KEGG- mca-MCA1228 TolA protein, putative (529 aa)
   
        0.597
hflD
High frequency lysogenization protein HflD homolog; KEGG- mca-MCA0201 hypothetical protein; HAMAP- Uncharacterised protein family UPF0274; PFAM- Uncharacterised protein family UPF0274 (207 aa)
   
        0.588
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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