STRINGSTRING
Mettu_2880 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_2880" - VacJ family lipoprotein in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_2880VacJ family lipoprotein (253 aa)    
Predicted Functional Partners:
Mettu_0181
Mammalian cell entry related domain protein (155 aa)
 
     
  0.855
Mettu_2744
Toluene tolerance family protein (215 aa)
 
   
  0.852
Mettu_2541
Toluene tolerance family protein (214 aa)
 
   
  0.820
rnt
Exoribonuclease T ; Trims short 3’ overhangs of a variety of RNA species, leaving a one or two nucleotide 3’ overhang. Responsible for the end-turnover of tRNA- specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis (207 aa)
              0.638
Mettu_1015
Putative uncharacterized protein (379 aa)
 
     
  0.607
Mettu_0182
Putative uncharacterized protein (260 aa)
 
     
  0.604
Mettu_0183
Sulfate-transporting ATPase (275 aa)
 
     
  0.594
Mettu_0713
Hopanoid biosynthesis associated membrane protein HpnM (205 aa)
 
          0.559
Mettu_1016
Fe(3+)-transporting ATPase (266 aa)
         
  0.540
Mettu_1017
Mammalian cell entry related domain protein (304 aa)
         
  0.498
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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