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rnt protein (Methylobacter tundripaludum) - STRING interaction network
"rnt" - Exoribonuclease T in Methylobacter tundripaludum
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
rntExoribonuclease T ; Trims short 3’ overhangs of a variety of RNA species, leaving a one or two nucleotide 3’ overhang. Responsible for the end-turnover of tRNA- specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis (207 aa)    
Predicted Functional Partners:
Mettu_1953
DNA polymerase III subunit beta ; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (366 aa)
     
  0.962
Mettu_2187
DNA polymerase I (930 aa)
   
  0.955
Mettu_3850
DNA-directed DNA polymerase (1164 aa)
     
  0.928
Mettu_3089
DNA polymerase III, subunits gamma and tau (540 aa)
     
  0.907
truD
tRNA-uridine isomerase D ; Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs (339 aa)
   
        0.827
orn
Oligoribonuclease ; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides (181 aa)
     
  0.787
rnr
Ribonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (746 aa)
     
 
  0.723
rpmD
50S ribosomal protein L30 (61 aa)
     
    0.720
hflD
High frequency lysogenization protein HflD homolog (207 aa)
   
        0.712
der
GTP-binding protein EngA ; GTPase that plays an essential role in the late steps of ribosome biogenesis (465 aa)
     
   
  0.672
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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