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STRINGSTRING
Mettu_2909 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_2909" - PFAM: Thioesterase superfamily in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_2909PFAM- Thioesterase superfamily; KEGG- msl-Msil_2092 thioesterase superfamily protein (165 aa)    
Predicted Functional Partners:
Mettu_3921
PFAM- 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG- rce-RC1_1947 3-hydroxyacyl-CoA dehydrogenase, putative (779 aa)
   
  0.951
parC
DNA topoisomerase 4 subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily (743 aa)
   
        0.848
Mettu_3920
PFAM- Protein of unknown function DUF1974; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG- nhl-Nhal_2075 protein of unknown function DUF1974 (818 aa)
   
 
  0.730
Mettu_2907
Putative transcriptional regulator, Crp/Fnr family; KEGG- dal-Dalk_0239 cyclic nucleotide-binding protein; PFAM- Cyclic nucleotide-binding; SMART- Cyclic nucleotide-binding (164 aa)
   
        0.671
Mettu_2910
PFAM- Putative helicase A859L; KEGG- dat-HRM2_20610 hypothetical protein (398 aa)
              0.634
Mettu_2914
KEGG- dat-HRM2_20630 putative type II restriction enzyme (methylase subunit) (888 aa)
              0.606
Mettu_2913
PFAM- Protein of unknown function DUF497; KEGG- glo-Glov_2221 protein of unknown function DUF497 (97 aa)
              0.606
Mettu_2912
annotation not available (69 aa)
              0.606
Mettu_2911
KEGG- dat-HRM2_20620 ATP-dependent DNA excision repair protein (helicase superfamily) (646 aa)
              0.606
Mettu_3922
Acetyl-CoA acetyltransferase; KEGG- azc-AZC_2972 thiolase; TIGRFAM- Thiolase; Belongs to the thiolase family (379 aa)
       
  0.565
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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