Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Pirin domain protein (286 aa)
Predicted Functional Partners:
DoxX family protein (151 aa)
Transcriptional regulator, LysR family (297 aa)
N-acetylneuraminate synthase (366 aa)
FMN-dependent NADH-azo compound oxidoreductase ; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity (200 aa)
12-oxophytodienoate reductase (364 aa)
Isochorismatase hydrolase (207 aa)
Flavoprotein WrbA (197 aa)
NAD(P)H-quinone oxidoreductase (200 aa)
Transcriptional regulator, LysR family (304 aa)
ArsC family protein (295 aa)
Your Current Organism:
NCBI taxonomy Id: 697282 Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96