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Mettu_3000 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3000" - Transcriptional regulator, BadM/Rrf2 family in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3000Transcriptional regulator, BadM/Rrf2 family; KEGG- mca-MCA0993 Rrf2 family protein; TIGRFAM- SUF system FeS cluster assembly, Rtf2-type regulator; Transcriptional regulator, Rrf2; PFAM- Transcriptional regulator, Rrf2 (149 aa)    
Predicted Functional Partners:
Mettu_3391
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (301 aa)
   
 
  0.926
Mettu_2999
FeS assembly protein SufB; KEGG- mca-MCA0992 cysteine desulfurase activator complex subunit SufB; TIGRFAM- SUF system FeS cluster assembly, SufB; PFAM- SUF system FeS cluster assembly, SufBD (482 aa)
 
     
  0.911
Mettu_2996
KEGG- mca-MCA0990 FeS assembly protein SufD; TIGRFAM- SUF system FeS cluster assembly, SufD; PFAM- SUF system FeS cluster assembly, SufBD (440 aa)
 
     
  0.891
Mettu_2997
TIGRFAM- ATPase SufC, SUF system FeS cluster assembly; PFAM- ABC transporter-like; KEGG- mca-MCA0991 FeS assembly ATPase SufC; SMART- ATPase, AAA+ type, core (251 aa)
 
     
  0.882
Mettu_2998
KEGG- llo-LLO_2003 hypothetical protein (319 aa)
              0.796
Mettu_3001
KEGG- mca-MCA2627 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM- Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM- ComEC/Rec2-related protein (777 aa)
         
  0.661
Mettu_2993
KEGG- reh-H16_B1516 iron sulfur cluster assembly protein (SufU); TIGRFAM- SUF system FeS cluster assembly, SufU scaffold; PFAM- NIF system FeS cluster assembly, NifU, N-terminal (150 aa)
 
 
  0.617
Mettu_3390
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine (402 aa)
   
 
  0.538
Mettu_0026
KEGG- mca-MCA2884 cysteine desulfurase; PFAM- Aminotransferase, class V/Cysteine desulfurase (368 aa)
   
 
  0.538
Mettu_3002
PFAM- Protein of unknown function DUF2062; KEGG- slo-Shew_1636 hypothetical protein (190 aa)
              0.467
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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