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Mettu_3014 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3014" - Transporter in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3014Transporter; PFAM- Sodium-neurotransmitter symporter; KEGG- tgr-Tgr7_0963 sodium-neurotransmitter symporter; Belongs to the sodium-neurotransmitter symporter (SNF) (TC 2.A.22) family (453 aa)    
Predicted Functional Partners:
Mettu_3013
Cyclase/dehydrase; PFAM- Streptomyces cyclase/dehydrase; KEGG- alv-Alvin_2269 cyclase/dehydrase (143 aa)
 
        0.892
Mettu_3012
UPF0125 protein Mettu_3012; KEGG- nhl-Nhal_0884 protein of unknown function UPF0125; HAMAP- Protein rnfH; PFAM- Uncharacterised protein family UPF0125; Belongs to the UPF0125 (RnfH) family (91 aa)
              0.889
Mettu_3486
PFAM- Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG- hse-Hsero_1085 hemolysin protein (443 aa)
   
        0.743
Mettu_3011
KEGG- amr-AM1_2255 hypothetical protein (77 aa)
 
          0.738
Mettu_3010
KEGG- dba-Dbac_0823 plasmid stabilization system; manually curated; PFAM- Plasmid stabilisation system (87 aa)
              0.703
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (161 aa)
              0.694
Mettu_3009
annotation not available (209 aa)
              0.603
Mettu_3016
PFAM- Isochorismatase-like; KEGG- tgr-Tgr7_0482 isochorismatase hydrolase (188 aa)
              0.401
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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