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Mettu_3017 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3017" - HopJ type III effector protein in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3017HopJ type III effector protein (125 aa)    
Predicted Functional Partners:
Mettu_3016
Isochorismatase hydrolase (188 aa)
              0.775
Mettu_1048
Putative uncharacterized protein (99 aa)
            0.769
Mettu_3792
Putative uncharacterized protein (669 aa)
   
          0.582
Mettu_0151
Putative uncharacterized protein (78 aa)
   
          0.578
smpB
Small protein B ; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a "tag peptide", a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to tra [...] (161 aa)
              0.540
Mettu_3019
rRNA methylase (191 aa)
              0.487
Mettu_3018
FAD dependent oxidoreductase (353 aa)
              0.487
Mettu_2159
Putative uncharacterized protein (181 aa)
   
        0.450
Mettu_2396
Putative uncharacterized protein (275 aa)
   
          0.424
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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