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STRINGSTRING
Mettu_3075 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3075" - PFAM: LysR, substrate-binding in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3075PFAM- LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG- dar-Daro_1525 LysR family transcriptional regulator (299 aa)    
Predicted Functional Partners:
Mettu_3076
Alkyl hydroperoxide reductase AhpD; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity (181 aa)
 
 
 
  0.795
Mettu_3921
PFAM- 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG- rce-RC1_1947 3-hydroxyacyl-CoA dehydrogenase, putative (779 aa)
       
  0.660
Mettu_3996
PFAM- Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG- lbf-LBF_2202 glutathione transferase (201 aa)
 
     
  0.594
Mettu_2899
KEGG- mca-MCA0665 glycine cleavage system transcriptional repressor, putative (186 aa)
       
  0.574
Mettu_3068
Manually curated; KEGG- gca-Galf_1930 transcriptional regulator, AraC family (305 aa)
   
   
  0.537
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (337 aa)
     
      0.511
Mettu_2825
KEGG- alv-Alvin_2084 chorismate mutase; TIGRFAM- Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM- Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT (361 aa)
       
  0.484
Mettu_1576
Outer membrane adhesin like proteiin; TIGRFAM- VCBS repeat domain; PFAM- Putative Ig; KEGG- cch-Cag_1242 VCBS; SMART- Dystroglycan-type cadherin-like (6210 aa)
         
  0.472
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate (733 aa)
         
  0.471
Mettu_2759
SMART- Helix-turn-helix, AraC domain; KEGG- sno-Snov_2699 transcriptional regulator, AraC family (254 aa)
   
   
  0.467
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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