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Mettu_3107 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3107" - Integrase family protein in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3107Integrase family protein; PFAM- Integrase, catalytic core, phage; KEGG- gca-Galf_2491 integrase family protein (207 aa)    
Predicted Functional Partners:
Mettu_2825
KEGG- alv-Alvin_2084 chorismate mutase; TIGRFAM- Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM- Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT (361 aa)
         
  0.746
Mettu_3755
RNA polymerase, sigma 32 subunit, RpoH; KEGG- nde-NIDE0990 RNA polymerase sigma factor RpoD (sigma-70); TIGRFAM- RNA polymerase sigma-70; PFAM- RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3 (448 aa)
       
 
  0.497
rpoS
KEGG- alv-Alvin_0780 RNA polymerase sigma-70 subunit RpoD subfamily; TIGRFAM- RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM- RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 (342 aa)
       
 
  0.497
Mettu_2662
KEGG- RNA polymerase, sigma 70 subunit, RpoD subfamily; TIGRFAM- RNA polymerase sigma-70; PFAM- RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; Belongs to the sigma-70 factor family (391 aa)
       
 
  0.497
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (602 aa)
       
 
  0.497
rpoH
RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes (285 aa)
       
 
  0.497
Mettu_4156
Histone family protein DNA-binding protein; KEGG- shl-Shal_2046 integration host factor subunit beta; PFAM- Histone-like bacterial DNA-binding protein; SMART- Histone-like bacterial DNA-binding protein (103 aa)
       
 
  0.437
Mettu_3872
KEGG- mca-MCA0532 DNA-binding protein HU-beta; PFAM- Histone-like bacterial DNA-binding protein; SMART- Histone-like bacterial DNA-binding protein (90 aa)
       
 
  0.437
himA
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (98 aa)
       
 
  0.437
himD
Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (101 aa)
       
 
  0.437
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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