• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_3161 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3161" - PFAM: Extracellular ligand-binding receptor in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3161PFAM- Extracellular ligand-binding receptor; KEGG- gca-Galf_2118 putative aliphatic amidase expression-regulating protein (407 aa)    
Predicted Functional Partners:
Mettu_3160
Histidine kinase; TIGRFAM- PAS; PFAM- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS fold-3; Signal transduction response regulator, receiver region; KEGG- app-CAP2UW1_2602 PAS/PAC sensor hybrid histidine kinase; SMART- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAC motif; Signal transduction response regulator, receiver region (929 aa)
 
 
  0.958
Mettu_3162
Histidine kinase; TIGRFAM- PAS; PFAM- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; PAS fold-3; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; KEGG- azo-azo2450 putative two-component system sensor protein; SMART- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; PAS; PAC motif (1278 aa)
 
 
    0.791
Mettu_1576
Outer membrane adhesin like proteiin; TIGRFAM- VCBS repeat domain; PFAM- Putative Ig; KEGG- cch-Cag_1242 VCBS; SMART- Dystroglycan-type cadherin-like (6210 aa)
   
  0.781
Mettu_0021
Diguanylate cyclase with PAS/PAC sensor; SMART- Diguanylate cyclase, predicted; Extracellular solute-binding protein, family 3; TIGRFAM- Diguanylate cyclase, predicted; PAS; KEGG- sdn-Sden_0076 GGDEF domain-containing protein; PFAM- Diguanylate cyclase, predicted; Extracellular solute-binding protein, family 3; PAS fold-3 (669 aa)
 
 
  0.760
Mettu_1152
Response regulator receiver and ANTAR domain protein; PFAM- ANTAR; KEGG- mca-MCA0588 response regulator NasT (191 aa)
 
 
  0.694
Mettu_2817
Multi-sensor signal transduction histidine kinase; KEGG- gbm-Gbem_2950 PAS domain-containing sensor histidine kinase response regulator; TIGRFAM- PAS; SMART- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS (885 aa)
     
  0.662
Mettu_3501
KEGG- response regulator receiver; PFAM- Signal transduction response regulator, receiver region; ANTAR; SMART- Signal transduction response regulator, receiver region (201 aa)
   
 
  0.650
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides; Belongs to the glycosyl hydrolase 3 family. NagZ subfamily (336 aa)
         
  0.640
Mettu_3163
Response regulator receiver and Hpt phospho transfer protein; KEGG- hch-HCH_04142 chemotaxis protein histidine kinase-like kinase; PFAM- Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction response regulator, receiver region; SMART- Signal transduction histidine kinase, phosphotransfer (Hpt) region (250 aa)
       
    0.626
Mettu_3852
Multi-sensor hybrid histidine kinase; TIGRFAM- PAS; PFAM- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-3; PAS fold-4; Signal transduction response regulator, receiver region; KEGG- bxe-Bxe_B1311 PAS/PAC sensor hybrid histidine kinase; SMART- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS; Signal transduction response regulator, receiver region (872 aa)
     
  0.622
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (7%) [HD]