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STRINGSTRING
Mettu_3223 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3223" - PFAM: Type II secretion system F domain in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3223PFAM- Type II secretion system F domain; KEGG- meh-M301_1282 type II secretion system F domain protein (408 aa)    
Predicted Functional Partners:
Mettu_3224
KEGG- meh-M301_1283 type II secretion system protein E; PFAM- Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART- ATPase, AAA+ type, core (568 aa)
 
  0.983
Mettu_2522
KEGG- nhl-Nhal_3847 type IV-A pilus assembly ATPase PilB; TIGRFAM- ATPase, type IV, pilus assembly, PilB; PFAM- Type II secretion system protein E; General secretory system II, protein E, N-terminal (570 aa)
 
  0.937
Mettu_1870
General secretory pathway protein E; TIGRFAM- Type II secretion system gspE; PFAM- Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG- mca-MCA1114 general secretion pathway protein E; SMART- ATPase, AAA+ type, core (560 aa)
 
  0.934
Mettu_1033
KEGG- dar-Daro_1151 type II secretion system protein E; PFAM- Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART- ATPase, AAA+ type, core (605 aa)
 
  0.934
Mettu_1686
Twitching motility protein; TIGRFAM- Pilus retraction protein PilT; PFAM- Type II secretion system protein E; KEGG- mca-MCA1537 twitching motility protein PilT; SMART- ATPase, AAA+ type, core (345 aa)
 
   
  0.927
Mettu_1086
Type IV pilus secretin PilQ; KEGG- mca-MCA0329 fimbrial assembly protein PilQ; TIGRFAM- Type IV pilus secretin PilQ; PFAM- Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal (785 aa)
 
 
  0.896
Mettu_2520
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue (300 aa)
 
   
  0.886
Mettu_0065
Twitching motility protein; TIGRFAM- Pilus retraction protein PilT; PFAM- Type II secretion system protein E; KEGG- alv-Alvin_2322 twitching motility protein; SMART- ATPase, AAA+ type, core (477 aa)
   
   
  0.882
Mettu_0064
KEGG- alv-Alvin_2323 twitching motility protein; TIGRFAM- Pilus retraction protein PilT; PFAM- Type II secretion system protein E (379 aa)
   
   
  0.879
Mettu_3222
KEGG- meh-M301_1281 hypothetical protein (152 aa)
              0.845
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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