STRINGSTRING
Mettu_3409 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3409" - Transcriptional regulator, NifA, Fis Family in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3409Transcriptional regulator, NifA, Fis Family (513 aa)    
Predicted Functional Partners:
Mettu_3408
PAS/PAC sensor signal transduction histidine kinase (538 aa)
     
  0.974
Mettu_2483
RNA polymerase sigma-54 factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (481 aa)
   
     
  0.870
Mettu_3414
Nitrogenase cofactor biosynthesis protein NifB (496 aa)
 
     
  0.768
Mettu_3420
NifQ family protein (191 aa)
 
     
  0.646
Mettu_3383
NifZ family protein (159 aa)
 
     
  0.624
Mettu_3326
Putative uncharacterized protein (279 aa)
 
          0.624
Mettu_3330
Nitrogen fixation protein FixT (74 aa)
 
          0.563
Mettu_3410
Putative uncharacterized protein (86 aa)
              0.559
Mettu_1815
Two component, sigma54 specific, transcriptional regulator, Fis family (447 aa)
 
 
 
0.539
Mettu_1183
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family (471 aa)
 
 
 
0.539
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (15%) [HD]