• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_3459 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3459" - PFAM: Outer membrane protein, OmpA/MotB, C-terminal in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3459PFAM- Outer membrane protein, OmpA/MotB, C-terminal; KEGG- vsa-VSAL_II0621 putative outer membrane protein, OmpA family (322 aa)    
Predicted Functional Partners:
Mettu_1576
Outer membrane adhesin like proteiin; TIGRFAM- VCBS repeat domain; PFAM- Putative Ig; KEGG- cch-Cag_1242 VCBS; SMART- Dystroglycan-type cadherin-like (6210 aa)
   
  0.886
Mettu_0379
ATP synthase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family (249 aa)
   
  0.802
Mettu_3038
PFAM- Outer membrane protein, OmpA/MotB, C-terminal; KEGG- dal-Dalk_0230 OmpA/MotB domain protein; Belongs to the ompA family (396 aa)
   
 
      0.782
Mettu_2846
PFAM- NADH-ubiquinone oxidoreductase, 30kDa subunit; KEGG- mca-MCA1138 hydrogenase subunit (524 aa)
     
 
  0.749
Mettu_0774
PFAM- Outer membrane protein, OmpA/MotB, C-terminal; KEGG- mca-MCA3103 outer membrane protein MopB; Belongs to the ompA family (363 aa)
   
 
0.688
rpmF
TIGRFAM- Ribosomal protein L32p; HAMAP- Ribosomal protein L32p; KEGG- sde-Sde_1626 50S ribosomal protein L32; PFAM- Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family (60 aa)
     
      0.684
nuoI
NADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (171 aa)
       
  0.677
Mettu_3349
KEGG- alv-Alvin_0908 ferredoxin III, nif-specific; TIGRFAM- Ferredoxin III 4[4Fe-4S], nif-specific; PFAM- 4Fe-4S ferredoxin, iron-sulphur binding, subgroup (105 aa)
       
  0.677
Mettu_3004
KEGG- mca-MCA2624 lipoprotein ABC transporter, permease protein LolE; TIGRFAM- Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM- Protein of unknown function DUF214, permase predicted (415 aa)
   
 
  0.675
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (206 aa)
   
 
  0.675
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (9%) [HD]