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Mettu_3467 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3467" - Cold-shock DNA-binding domain protein in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3467Cold-shock DNA-binding domain protein (71 aa)    
Predicted Functional Partners:
dnaK
Heat shock protein 70 ; Acts as a chaperone (644 aa)
       
  0.824
deaD
Cold-shock DEAD box protein A ; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation (596 aa)
   
  0.801
rhlB
ATP-dependent RNA helicase RhlB ; DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA (451 aa)
   
  0.801
Mettu_1252
DEAD/DEAH box helicase domain protein (462 aa)
   
  0.801
Mettu_1250
DEAD/DEAH box helicase domain protein (419 aa)
   
  0.801
Mettu_0349
DEAD/DEAH box helicase domain protein (444 aa)
   
  0.801
Mettu_0085
DEAD/DEAH box helicase domain protein (441 aa)
   
  0.801
Mettu_0730
Serine/threonine protein kinase (448 aa)
       
    0.694
Mettu_4189
ATP-dependent helicase HrpA (1315 aa)
       
    0.676
Mettu_3285
RNP-1 like RNA-binding protein (88 aa)
   
    0.669
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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