Mettu_3513 protein (Methylobacter tundripaludum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Score

Mettu_3513

Polysaccharide biosynthesis protein (439 aa)

Predicted Functional Partners:

Mettu_3516

0.929

Mettu_0645

0.792

Mettu_2111

0.778

Mettu_1984

0.778

Mettu_1961

0.778

Mettu_1978

0.777

Mettu_0123

0.777

Mettu_1980

0.775

Mettu_4284

0.774

Mettu_1960

0.773

Your Current Organism:

Methylobacter tundripaludum

NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Mettu_0123	Mettu_0645	Putative uncharacterized protein	O-antigen polymerase	0.712
Mettu_0123	Mettu_1960	Putative uncharacterized protein	TniB family protein	0.675
Mettu_0123	Mettu_1961	Putative uncharacterized protein	Putative uncharacterized protein	0.777
Mettu_0123	Mettu_1978	Putative uncharacterized protein	TnsA endonuclease	0.732
Mettu_0123	Mettu_1980	Putative uncharacterized protein	TniB family protein	0.678
Mettu_0123	Mettu_1984	Putative uncharacterized protein	Putative uncharacterized protein	0.751
Mettu_0123	Mettu_2111	Putative uncharacterized protein	AAA ATPase	0.778
Mettu_0123	Mettu_3513	Putative uncharacterized protein	Polysaccharide biosynthesis protein	0.777
Mettu_0123	Mettu_4284	Putative uncharacterized protein	Putative uncharacterized protein	0.703
Mettu_0645	Mettu_0123	O-antigen polymerase	Putative uncharacterized protein	0.712
Mettu_0645	Mettu_1960	O-antigen polymerase	TniB family protein	0.568
Mettu_0645	Mettu_1961	O-antigen polymerase	Putative uncharacterized protein	0.748
Mettu_0645	Mettu_1978	O-antigen polymerase	TnsA endonuclease	0.558
Mettu_0645	Mettu_1980	O-antigen polymerase	TniB family protein	0.532
Mettu_0645	Mettu_1984	O-antigen polymerase	Putative uncharacterized protein	0.644
Mettu_0645	Mettu_2111	O-antigen polymerase	AAA ATPase	0.757
Mettu_0645	Mettu_3513	O-antigen polymerase	Polysaccharide biosynthesis protein	0.792
Mettu_0645	Mettu_3516	O-antigen polymerase	Capsular exopolysaccharide family	0.738
Mettu_0645	Mettu_4284	O-antigen polymerase	Putative uncharacterized protein	0.602
Mettu_1960	Mettu_0123	TniB family protein	Putative uncharacterized protein	0.675

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