• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_3517 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3517" - PFAM: Polysaccharide export protein in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3517PFAM- Polysaccharide export protein; Soluble ligand binding domain; KEGG- neu-NE2279 polysaccharide export protein (375 aa)    
Predicted Functional Partners:
Mettu_3516
Capsular exopolysaccharide family; TIGRFAM- Exopolysaccharide synthesis protein; KEGG- bxe-Bxe_C1086 exopolysaccharide transporter; PFAM- Lipopolysaccharide biosynthesis (790 aa)
 
  0.995
Mettu_4239
KEGG- meh-M301_2271 chain length determinant protein tyrosine kinase EpsG; TIGRFAM- Tyrosine-protein kinase, chain length determinant protein EpsG; Exopolysaccharide synthesis protein (293 aa)
 
  0.876
Mettu_3894
Capsular exopolysaccharide family; KEGG- nhl-Nhal_3333 tyrosine-protein kinase; TIGRFAM- Exopolysaccharide synthesis protein (251 aa)
 
  0.875
Mettu_3518
TIGRFAM- Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate glucose phosphotransferase, WcaJ; KEGG- syf-Synpcc7942_2026 glycosyltransferase; PFAM- Bacterial sugar transferase (473 aa)
 
 
  0.869
Mettu_3893
PFAM- Lipopolysaccharide biosynthesis; KEGG- nde-NIDE2408 putative lipopolysaccharide biosynthesis protein (577 aa)
   
  0.734
Mettu_4240
KEGG- meh-M301_2272 chain length determinant protein EpsF; TIGRFAM- Chain length determinant protein EpsF; PFAM- Lipopolysaccharide biosynthesis (462 aa)
   
  0.733
Mettu_0340
KEGG- mca-MCA1688 hypothetical protein (419 aa)
   
  0.717
Mettu_1902
Iron-sulfur cluster carrier protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP (363 aa)
   
  0.700
Mettu_3515
Uncharacterized protein; KEGG- pvi-Cvib_1071 O-antigen polymerase (417 aa)
              0.679
Mettu_3001
KEGG- mca-MCA2627 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM- Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM- ComEC/Rec2-related protein (777 aa)
         
  0.633
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (9%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >