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Mettu_3555 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3555" - PFAM: YkuD domain in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3555PFAM- YkuD domain; KEGG- mca-MCA0855 ErfK/YbiS/YcfS/YnhG family protein (354 aa)    
Predicted Functional Partners:
Mettu_1556
ErfK/YbiS/YcfS/YnhG family protein; PFAM- YkuD domain; KEGG- mca-MCA0606 hypothetical protein (180 aa)
 
     
  0.716
Mettu_0314
KEGG- sat-SYN_02082 membrane carboxypeptidase (1047 aa)
         
  0.604
Mettu_3554
TIGRFAM- D-3-phosphoglycerate dehydrogenase; KEGG- dol-Dole_2852 D-3-phosphoglycerate dehydrogenase; PFAM- D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; Amino acid-binding ACT (527 aa)
              0.545
Mettu_3553
TIGRFAM- HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG- cre-CHLREDRAFT_194322 phosphoserine phosphatase; PFAM- Haloacid dehalogenase-like hydrolase (213 aa)
              0.544
Mettu_3480
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1212 aa)
     
 
  0.503
Mettu_1397
Beta-lactamase; KEGG- mca-MCA0105 D-alanyl-D-alanine carboxypeptidase; PFAM- Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; Belongs to the peptidase S11 family (389 aa)
   
 
    0.473
Mettu_3556
PFAM- Amino acid permease-associated region; KEGG- mca-MCA0344 amino acid permease family protein (469 aa)
              0.404
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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