• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
nagZ protein (Methylobacter tundripaludum) - STRING interaction network
"nagZ" - Beta-hexosaminidase in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagZBeta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides; Belongs to the glycosyl hydrolase 3 family. NagZ subfamily (336 aa)    
Predicted Functional Partners:
anmK
Anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family (385 aa)
 
 
  0.993
Mettu_1551
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; KEGG- efe-EFER_0130 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM- N-acetylmuramoyl-L-alanine amidase, family 2; SMART- N-acetylmuramoyl-L-alanine amidase, family 2 (180 aa)
 
   
  0.992
Mettu_4348
Cell wall hydrolase/autolysin; KEGG- noc-Noc_0337 N-acetylmuramoyl-L-alanine amidase; PFAM- Cell wall hydrolase/autolysin, catalytic; SMART- Cell wall hydrolase/autolysin, catalytic (429 aa)
   
 
  0.982
Mettu_3580
Probable S-methyl-5’-thioinosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5’- thioinosine (MTI) to hypoxanthine and 5-methylthioribose-1- phosphate. Involved in the breakdown of S-methyl-5’-thioadenosine (MTA), a major by-product of polyamine biosynthesis. Catabolism of (MTA) occurs via deamination to MTI and phosphorolysis to hypoxanthine (242 aa)
   
   
  0.901
Mettu_3579
PFAM- Phosphoribosyltransferase; KEGG- nhl-Nhal_2865 phosphoribosyltransferase (179 aa)
              0.889
Mettu_3141
Peptidase M23; KEGG- vha-VIBHAR_03518 hypothetical protein; PFAM- Peptidase M23; Peptidoglycan-binding lysin domain; SMART- Peptidoglycan-binding Lysin subgroup (297 aa)
 
 
  0.861
Mettu_1576
Outer membrane adhesin like proteiin; TIGRFAM- VCBS repeat domain; PFAM- Putative Ig; KEGG- cch-Cag_1242 VCBS; SMART- Dystroglycan-type cadherin-like (6210 aa)
   
 
    0.861
Mettu_4263
PFAM- Aminoglycoside phosphotransferase; KEGG- mca-MCA0600 hypothetical protein (332 aa)
       
  0.821
Mettu_1238
Flagellar rod assembly protein/muramidase FlgJ; TIGRFAM- Flagellar protein FlgJ type-2; PFAM- Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal; KEGG- sse-Ssed_3079 flagellar rod assembly protein/muramidase FlgJ; SMART- Lysozyme subfamily 2 (366 aa)
         
  0.816
Mettu_3184
Lytic transglycosylase catalytic; KEGG- cps-CPS_1998 putative membrane-bound lytic murein transglycosylase; PFAM- Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART- Peptidoglycan-binding Lysin subgroup (537 aa)
       
  0.813
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (8%) [HD]