STRINGSTRING
Mettu_3595 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3595" - Deoxyribodipyrimidine photo-lyase in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3595Deoxyribodipyrimidine photo-lyase (453 aa)    
Predicted Functional Partners:
Mettu_3598
Putative uncharacterized protein (311 aa)
 
   
  0.829
Mettu_3596
Putative uncharacterized protein (142 aa)
              0.815
Mettu_2661
Regulatory protein MerR (300 aa)
 
   
  0.775
Mettu_4285
Phytoene desaturase (498 aa)
 
        0.668
Mettu_2273
Cysteine synthase (325 aa)
     
      0.667
Mettu_0847
Cysteine synthase (299 aa)
     
      0.667
Mettu_3597
Putative uncharacterized protein (36 aa)
              0.646
Mettu_3594
Putative uncharacterized protein (300 aa)
 
   
  0.644
Mettu_4287
Phytoene desaturase (511 aa)
 
        0.634
hemF
Oxygen-dependent coproporphyrinogen-III oxidase ; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX (304 aa)
   
        0.540
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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