• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_3719 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3719" - KEGG: ote:Oter_1955 GTPase domain-containing protein in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3719KEGG- ote-Oter_1955 GTPase domain-containing protein (168 aa)    
Predicted Functional Partners:
Mettu_3721
PFAM- Band 7 protein; KEGG- ote-Oter_1957 band 7 protein (348 aa)
 
          0.759
Mettu_3720
TIGRFAM- Cyclic peptide transporter; PFAM- ABC transporter-like; KEGG- hch-HCH_02804 siderophore ABC transporter ATPase/permease; SMART- ATPase, AAA+ type, core (545 aa)
 
          0.707
Mettu_3714
TIGRFAM- Amino acid adenylation; KEGG- non-ribosomal peptide synthetase; PFAM- AMP-dependent synthetase/ligase; Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Phosphopantetheine-binding; Aminotransferase class-III; Luciferase-like, subgroup; Condensation domain (3129 aa)
 
          0.629
Mettu_3703
Oleoyl-(Acyl-carrier-protein) hydrolase; KEGG- aca-ACP_1148 thioesterase domain protein; PFAM- Thioesterase (275 aa)
 
          0.555
Mettu_3715
KEGG- npu-Npun_R3425 beta-ketoacyl synthase; PFAM- Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Short-chain dehydrogenase/reductase SDR; Phosphopantetheine-binding (1529 aa)
 
          0.543
Mettu_3713
KEGG- npu-Npun_F3359 beta-ketoacyl synthase; PFAM- Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Polyketide synthase, KR; Phosphopantetheine-binding (1600 aa)
 
          0.529
Mettu_3712
6-deoxyerythronolide-B synthase., NADPH-quinone reductase; KEGG- cyt-cce_3079 polyketide synthase; PFAM- Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Methyltransferase type 12; Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; Polyketide synthase, KR; Phosphopantetheine-binding (2569 aa)
 
          0.528
Mettu_3702
Long-chain-fatty-acid--(Acyl-carrier-protein) ligase., 6-deoxyerythronolide-B synthase; KEGG- amino acid adenylation domain-containing protein; PFAM- Beta-ketoacyl synthase, N-terminal; AMP-dependent synthetase/ligase; Polyketide synthase, KR; Phosphopantetheine-binding; Beta-ketoacyl synthase, C-terminal; Acyl transferase (3566 aa)
 
          0.523
Mettu_3700
TIGRFAM- Amino acid adenylation; KEGG- npu-Npun_R3425 beta-ketoacyl synthase; PFAM- AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Polyketide synthase, KR; Thioesterase; overlaps another CDS with the same product name (2911 aa)
 
          0.513
Mettu_3706
KEGG- npu-Npun_R2082 beta-ketoacyl synthase; PFAM- Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Polyketide synthase, KR; Phosphopantetheine-binding (1879 aa)
 
          0.495
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (10%) [HD]