• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
smg protein (Methylobacter tundripaludum) - STRING interaction network
"smg" - Protein Smg homolog in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smgProtein Smg homolog; KEGG- mca-MCA2840 hypothetical protein; HAMAP- Protein smg; PFAM- Protein of unknown function DUF494; Belongs to the Smg family (155 aa)    
Predicted Functional Partners:
Mettu_3782
KEGG- noc-Noc_3012 smf protein; TIGRFAM- DNA recombination-mediator protein A; PFAM- DNA recombination-mediator protein A (350 aa)
   
        0.847
Mettu_3781
KEGG- nwa-Nwat_3070 peptidoglycan-binding lysin domain-containing protein; PFAM- Peptidoglycan-binding lysin domain; SMART- Peptidoglycan-binding Lysin subgroup (372 aa)
              0.737
topA
DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...] (772 aa)
              0.691
zapD
Cell division protein ZapD; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity (256 aa)
   
          0.671
tsaC
Threonylcarbamoyl-AMP synthase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Catalyzes the conversion of L-threonine, HCO(3)(-)/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of diphosphate (185 aa)
              0.520
Mettu_3767
Multi-sensor signal transduction histidine kinase; TIGRFAM- PAS; PFAM- ATP-binding region, ATPase-like; HAMP linker domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; KEGG- mca-MCA2847 nitrogen regulation protein NtrY, putative; SMART- ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; PAS (724 aa)
 
          0.456
Mettu_2467
TIGRFAM- Conserved hypothetical protein CHP02099; KEGG- mca-MCA0380 hypothetical protein (1333 aa)
   
          0.452
Mettu_3768
KEGG- aeh-Mlg_2625 hypothetical protein (194 aa)
 
          0.446
Mettu_1207
PFAM- Protein of unknown function DUF2069, membrane; KEGG- cps-CPS_3192 hypothetical protein (117 aa)
   
          0.438
Mettu_2682
KEGG- nmu-Nmul_A2260 Slp family outer membrane lipoprotein; TIGRFAM- Outer membrane lipoprotein Slp; PFAM- Outer membrane lipoprotein Slp (187 aa)
   
          0.431
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (11%) [HD]