rpmI protein (Methylobacter tundripaludum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpmI

TIGRFAM- Ribosomal protein L35; HAMAP- Ribosomal protein L35; KEGG- mca-MCA0695 ribosomal protein L35; PFAM- Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (65 aa)

Predicted Functional Partners:

rplT

0.999

rplM

0.997

rplU

0.997

rplJ

0.997

rplQ

0.997

rplX

0.996

rpmA

0.996

rpmF

0.996

rplK

0.996

rplV

0.996

Your Current Organism:

Methylobacter tundripaludum

NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplJ	rplK	Mettu_1343	Mettu_1345	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	0.999
rplJ	rplM	Mettu_1343	Mettu_3765	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	0.998
rplJ	rplQ	Mettu_1343	Mettu_1307	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	TIGRFAM- Ribosomal protein L17; HAMAP- 50S ribosomal protein L17; KEGG- hch-HCH_06192 50S ribosomal protein L17; PFAM- Ribosomal protein L17	0.998
rplJ	rplT	Mettu_1343	Mettu_3797	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit	0.989
rplJ	rplU	Mettu_1343	Mettu_1696	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20	0.997
rplJ	rplV	Mettu_1343	Mettu_1328	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	0.998
rplJ	rplX	Mettu_1343	Mettu_1322	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit	0.996
rplJ	rpmA	Mettu_1343	Mettu_1695	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	TIGRFAM- Ribosomal protein L27; HAMAP- Ribosomal protein L27; KEGG- 50S ribosomal protein L27; PFAM- Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family	0.997
rplJ	rpmF	Mettu_1343	Mettu_0819	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	TIGRFAM- Ribosomal protein L32p; HAMAP- Ribosomal protein L32p; KEGG- sde-Sde_1626 50S ribosomal protein L32; PFAM- Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family	0.994
rplJ	rpmI	Mettu_1343	Mettu_3796	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	TIGRFAM- Ribosomal protein L35; HAMAP- Ribosomal protein L35; KEGG- mca-MCA0695 ribosomal protein L35; PFAM- Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family	0.997
rplK	rplJ	Mettu_1345	Mettu_1343	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors	0.999
rplK	rplM	Mettu_1345	Mettu_3765	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	0.999
rplK	rplQ	Mettu_1345	Mettu_1307	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	TIGRFAM- Ribosomal protein L17; HAMAP- 50S ribosomal protein L17; KEGG- hch-HCH_06192 50S ribosomal protein L17; PFAM- Ribosomal protein L17	0.998
rplK	rplT	Mettu_1345	Mettu_3797	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit	0.997
rplK	rplU	Mettu_1345	Mettu_1696	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20	0.996
rplK	rplV	Mettu_1345	Mettu_1328	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	0.998
rplK	rplX	Mettu_1345	Mettu_1322	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit	0.998
rplK	rpmA	Mettu_1345	Mettu_1695	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	TIGRFAM- Ribosomal protein L27; HAMAP- Ribosomal protein L27; KEGG- 50S ribosomal protein L27; PFAM- Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family	0.998
rplK	rpmF	Mettu_1345	Mettu_0819	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	TIGRFAM- Ribosomal protein L32p; HAMAP- Ribosomal protein L32p; KEGG- sde-Sde_1626 50S ribosomal protein L32; PFAM- Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family	0.991
rplK	rpmI	Mettu_1345	Mettu_3796	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors	TIGRFAM- Ribosomal protein L35; HAMAP- Ribosomal protein L35; KEGG- mca-MCA0695 ribosomal protein L35; PFAM- Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family	0.996

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2018

Credits

Access

Info

About