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rpmI protein (Methylobacter tundripaludum) - STRING interaction network
"rpmI" - TIGRFAM: Ribosomal protein L35 in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmITIGRFAM- Ribosomal protein L35; HAMAP- Ribosomal protein L35; KEGG- mca-MCA0695 ribosomal protein L35; PFAM- Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (65 aa)    
Predicted Functional Partners:
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (120 aa)
   
  0.999
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
     
  0.997
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
     
  0.997
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (164 aa)
     
  0.997
rplQ
TIGRFAM- Ribosomal protein L17; HAMAP- 50S ribosomal protein L17; KEGG- hch-HCH_06192 50S ribosomal protein L17; PFAM- Ribosomal protein L17 (125 aa)
   
  0.997
rplX
50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit (105 aa)
   
  0.996
rpmA
TIGRFAM- Ribosomal protein L27; HAMAP- Ribosomal protein L27; KEGG- 50S ribosomal protein L27; PFAM- Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (85 aa)
     
  0.996
rpmF
TIGRFAM- Ribosomal protein L32p; HAMAP- Ribosomal protein L32p; KEGG- sde-Sde_1626 50S ribosomal protein L32; PFAM- Ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family (60 aa)
 
  0.996
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors (143 aa)
     
  0.996
rplV
50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (111 aa)
     
  0.996
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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