Mettu_3819 protein (Methylobacter tundripaludum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

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[Homology]

Score

Mettu_3819

Putative uncharacterized protein (92 aa)

Predicted Functional Partners:

Mettu_3818

0.637

Mettu_3817

0.637

Mettu_3816

0.637

Mettu_3815

0.637

Mettu_3814

0.637

Mettu_3820

0.556

Your Current Organism:

Methylobacter tundripaludum

NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

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Databases

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Textmining

Coexpression

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node1	node2	node1 annotation	node2 annotation	score
Mettu_3814	Mettu_3815	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3814	Mettu_3816	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3814	Mettu_3817	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3814	Mettu_3818	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3814	Mettu_3819	Putative uncharacterized protein	Putative uncharacterized protein	0.637
Mettu_3814	Mettu_3820	Putative uncharacterized protein	Putative uncharacterized protein	0.427
Mettu_3815	Mettu_3814	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3815	Mettu_3816	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3815	Mettu_3817	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3815	Mettu_3818	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3815	Mettu_3819	Putative uncharacterized protein	Putative uncharacterized protein	0.637
Mettu_3815	Mettu_3820	Putative uncharacterized protein	Putative uncharacterized protein	0.427
Mettu_3816	Mettu_3814	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3816	Mettu_3815	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3816	Mettu_3817	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3816	Mettu_3818	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3816	Mettu_3819	Putative uncharacterized protein	Putative uncharacterized protein	0.637
Mettu_3816	Mettu_3820	Putative uncharacterized protein	Putative uncharacterized protein	0.427
Mettu_3817	Mettu_3814	Putative uncharacterized protein	Putative uncharacterized protein	0.859
Mettu_3817	Mettu_3815	Putative uncharacterized protein	Putative uncharacterized protein	0.859