• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_3830 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3830" - PFAM: NUDIX hydrolase domain in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3830PFAM- NUDIX hydrolase domain; KEGG- ote-Oter_2376 NUDIX hydrolase (168 aa)    
Predicted Functional Partners:
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (282 aa)
       
  0.876
Mettu_3829
KEGG- mca-MCA1131 hypothetical protein; TIGRFAM- NGG1p interacting factor 3, NIF3; PFAM- NGG1p interacting factor 3, NIF3 (254 aa)
              0.845
Mettu_0710
TIGRFAM- Hopene cyclase; Squalene cyclase; KEGG- mca-MCA0812 squalene-hopene cyclase; PFAM- Prenyltransferase/squalene oxidase (651 aa)
     
 
  0.756
Mettu_0576
TIGRFAM- Hopene cyclase; Squalene cyclase; KEGG- mca-MCA0812 squalene-hopene cyclase; PFAM- Prenyltransferase/squalene oxidase (654 aa)
     
 
  0.756
Mettu_0750
KEGG- mca-MCA0818 geranyltranstransferase; PFAM- Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family (298 aa)
   
 
  0.755
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate (289 aa)
   
 
  0.745
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis; Belongs to the IspH family (315 aa)
         
  0.737
Mettu_0711
PFAM- Squalene/phytoene synthase; KEGG- mca-MCA0813 squalene synthase (399 aa)
   
   
  0.668
Mettu_3452
PFAM- Phosphorylase kinase alphabeta; KEGG- ava-Ava_0370 phosphorylase kinase alphabeta (1077 aa)
       
    0.632
Mettu_2829
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (553 aa)
       
    0.623
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (8%) [HD]