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Mettu_3848 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3848" - Pseudouridine synthase in Methylobacter tundripaludum
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
Mettu_3848Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (319 aa)    
Predicted Functional Partners:
Mettu_3847
HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG- har-HEAR2086 putative phosphoglycolate phosphatase protein; TIGRFAM- HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM- Haloacid dehalogenase-like hydrolase (217 aa)
   
        0.928
Mettu_3846
KEGG- mca-MCA1478 signal peptide peptidase SppA, putative; TIGRFAM- Peptidase S49, SppA; PFAM- Peptidase S49 (321 aa)
 
        0.923
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis (465 aa)
 
 
  0.807
Mettu_2570
TIGRFAM- Pseudouridine synthase, RsuA and RluB/E/F; PFAM- RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG- nhl-Nhal_3572 RNA-binding S4 domain protein; SMART- RNA-binding S4; Belongs to the pseudouridine synthase RsuA family (279 aa)
 
  0.794
obg
GTPase Obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family (344 aa)
 
 
  0.728
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (877 aa)
 
        0.684
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (282 aa)
 
 
  0.622
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (206 aa)
 
      0.606
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (216 aa)
 
      0.606
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (337 aa)
 
      0.596
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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