Mettu_3867 protein (Methylobacter tundripaludum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mettu_3867

KEGG- chl-Chy400_3129 hypothetical protein (178 aa)

Predicted Functional Partners:

Mettu_4314

0.782

Mettu_0498

0.782

Mettu_0401

0.781

Mettu_0128

0.761

Mettu_3866

0.559

Mettu_3865

0.559

Mettu_3869

0.556

Mettu_3868

0.556

Mettu_3297

0.502

Mettu_0396

0.469

Your Current Organism:

Methylobacter tundripaludum

NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Mettu_0128	Mettu_0401	KEGG- hypothetical protein	Transposase; KEGG- rpd-RPD_3130 transposase and inactivated derivatives	0.750
Mettu_0128	Mettu_0498	KEGG- hypothetical protein	KEGG- npu-Npun_F5543 hypothetical protein	0.768
Mettu_0128	Mettu_3297	KEGG- hypothetical protein	KEGG- dal-Dalk_2311 hypothetical protein	0.565
Mettu_0128	Mettu_3867	KEGG- hypothetical protein	KEGG- chl-Chy400_3129 hypothetical protein	0.761
Mettu_0396	Mettu_3867	KEGG- hypothetical protein	KEGG- chl-Chy400_3129 hypothetical protein	0.469
Mettu_0401	Mettu_0128	Transposase; KEGG- rpd-RPD_3130 transposase and inactivated derivatives	KEGG- hypothetical protein	0.750
Mettu_0401	Mettu_3867	Transposase; KEGG- rpd-RPD_3130 transposase and inactivated derivatives	KEGG- chl-Chy400_3129 hypothetical protein	0.781
Mettu_0498	Mettu_0128	KEGG- npu-Npun_F5543 hypothetical protein	KEGG- hypothetical protein	0.768
Mettu_0498	Mettu_3867	KEGG- npu-Npun_F5543 hypothetical protein	KEGG- chl-Chy400_3129 hypothetical protein	0.782
Mettu_3297	Mettu_0128	KEGG- dal-Dalk_2311 hypothetical protein	KEGG- hypothetical protein	0.565
Mettu_3297	Mettu_3867	KEGG- dal-Dalk_2311 hypothetical protein	KEGG- chl-Chy400_3129 hypothetical protein	0.502
Mettu_3865	Mettu_3866	Nickel-transporting ATPase., Fe(3+)-transporting ATPase; PFAM- ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG- mca-MCA1268 peptide ABC transporter, ATP-binding protein; SMART- ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily	ABC-type transporter, integral membrane subunit; PFAM- Binding-protein-dependent transport systems inner membrane component; KEGG- mca-MCA1266 peptide ABC transporter, permease protein, putative	0.995
Mettu_3865	Mettu_3867	Nickel-transporting ATPase., Fe(3+)-transporting ATPase; PFAM- ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG- mca-MCA1268 peptide ABC transporter, ATP-binding protein; SMART- ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily	KEGG- chl-Chy400_3129 hypothetical protein	0.559
Mettu_3865	Mettu_3868	Nickel-transporting ATPase., Fe(3+)-transporting ATPase; PFAM- ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG- mca-MCA1268 peptide ABC transporter, ATP-binding protein; SMART- ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily	ABC-type transporter, integral membrane subunit; PFAM- Binding-protein-dependent transport systems inner membrane component; KEGG- mca-MCA1265 peptide ABC transporter, permease protein, putative	0.983
Mettu_3865	Mettu_3869	Nickel-transporting ATPase., Fe(3+)-transporting ATPase; PFAM- ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG- mca-MCA1268 peptide ABC transporter, ATP-binding protein; SMART- ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily	ABC-type transporter, periplasmic subunit; PFAM- Bacterial extracellular solute-binding protein, family 5; KEGG- mca-MCA1264 peptide ABC transporter, periplasmic peptide-binding protein, putative	0.942
Mettu_3866	Mettu_3865	ABC-type transporter, integral membrane subunit; PFAM- Binding-protein-dependent transport systems inner membrane component; KEGG- mca-MCA1266 peptide ABC transporter, permease protein, putative	Nickel-transporting ATPase., Fe(3+)-transporting ATPase; PFAM- ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG- mca-MCA1268 peptide ABC transporter, ATP-binding protein; SMART- ATPase, AAA+ type, core; Belongs to the ABC transporter superfamily	0.995
Mettu_3866	Mettu_3867	ABC-type transporter, integral membrane subunit; PFAM- Binding-protein-dependent transport systems inner membrane component; KEGG- mca-MCA1266 peptide ABC transporter, permease protein, putative	KEGG- chl-Chy400_3129 hypothetical protein	0.559
Mettu_3866	Mettu_3868	ABC-type transporter, integral membrane subunit; PFAM- Binding-protein-dependent transport systems inner membrane component; KEGG- mca-MCA1266 peptide ABC transporter, permease protein, putative	ABC-type transporter, integral membrane subunit; PFAM- Binding-protein-dependent transport systems inner membrane component; KEGG- mca-MCA1265 peptide ABC transporter, permease protein, putative	0.995
Mettu_3866	Mettu_3869	ABC-type transporter, integral membrane subunit; PFAM- Binding-protein-dependent transport systems inner membrane component; KEGG- mca-MCA1266 peptide ABC transporter, permease protein, putative	ABC-type transporter, periplasmic subunit; PFAM- Bacterial extracellular solute-binding protein, family 5; KEGG- mca-MCA1264 peptide ABC transporter, periplasmic peptide-binding protein, putative	0.981
Mettu_3867	Mettu_0128	KEGG- chl-Chy400_3129 hypothetical protein	KEGG- hypothetical protein	0.761

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2018

Credits

Access

Info

About