STRINGSTRING
Mettu_3893 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3893" - Lipopolysaccharide biosynthesis protein in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3893Lipopolysaccharide biosynthesis protein (577 aa)    
Predicted Functional Partners:
Mettu_3894
Capsular exopolysaccharide family (251 aa)
 
          0.962
Mettu_3892
Glutamine--scyllo-inositol transaminase (398 aa)
              0.775
Mettu_3891
UDP-glucose 4-epimerase (324 aa)
              0.775
Mettu_3915
Polysaccharide export protein (199 aa)
   
          0.770
Mettu_4229
Glycosyl transferase group 1 (406 aa)
   
          0.705
Mettu_1184
Putative uncharacterized protein (759 aa)
   
          0.621
Mettu_4075
Type IV pilus assembly PilZ (202 aa)
   
          0.608
Mettu_3895
Glycosyl transferase family 2 (292 aa)
 
          0.578
Mettu_1984
Putative uncharacterized protein (602 aa)
   
          0.556
Mettu_0784
SH3 type 3 domain protein (223 aa)
   
          0.512
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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