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STRINGSTRING
Mettu_3957 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3957" - PFAM: Lytic transglycosylase-like, catalytic in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3957PFAM- Lytic transglycosylase-like, catalytic; KEGG- mca-MCA2008 transglycosylase SLT domain-containing protein (211 aa)    
Predicted Functional Partners:
purT
Formate-dependent phosphoribosylglycinamide formyltransferase; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family (400 aa)
              0.854
Mettu_3955
KEGG- noc-Noc_1585 DNA mismatch repair protein MutS-like; PFAM- DNA mismatch repair protein MutS, C-terminal; SMART- DNA mismatch repair protein MutS, C-terminal (532 aa)
              0.842
Mettu_1231
PFAM- NLP/P60; KEGG- mca-MCA2789 NLP/P60 family protein (160 aa)
 
  0.806
Mettu_3958
PFAM- Protein of unknown function DUF1810; KEGG- alv-Alvin_3249 protein of unknown function DUF1810 (148 aa)
              0.700
Mettu_3959
annotation not available (50 aa)
              0.661
Mettu_3141
Peptidase M23; KEGG- vha-VIBHAR_03518 hypothetical protein; PFAM- Peptidase M23; Peptidoglycan-binding lysin domain; SMART- Peptidoglycan-binding Lysin subgroup (297 aa)
 
   
  0.567
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX; Belongs to the ferrochelatase family (322 aa)
              0.453
folE
PFAM- GTP cyclohydrolase I/Nitrile oxidoreductase; TIGRFAM- GTP cyclohydrolase I; HAMAP- GTP cyclohydrolase I; KEGG- mca-MCA1670 GTP cyclohydrolase I (180 aa)
              0.452
Mettu_1391
KEGG- mca-MCA0101 rod shape-determining protein MreC; TIGRFAM- Rod shape-determining protein MreC, subtype; PFAM- Rod shape-determining protein MreC (339 aa)
 
 
 
  0.439
mrdA
Peptidoglycan D,D-transpeptidase MrdA; Catalyzes cross-linking of the peptidoglycan cell wall; Belongs to the transpeptidase family. MrdA subfamily (612 aa)
 
 
  0.419
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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