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STRINGSTRING
Mettu_3966 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3966" - KEGG: msl:Msil_3516 transcriptional regulator, AraC family in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3966KEGG- msl-Msil_3516 transcriptional regulator, AraC family; PFAM- Helix-turn-helix, AraC type; Cupin 2, conserved barrel; SMART- Helix-turn-helix, AraC domain (330 aa)    
Predicted Functional Partners:
Mettu_0443
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family (803 aa)
          
  0.746
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (337 aa)
        
  0.640
Mettu_1576
Outer membrane adhesin like proteiin; TIGRFAM- VCBS repeat domain; PFAM- Putative Ig; KEGG- cch-Cag_1242 VCBS; SMART- Dystroglycan-type cadherin-like (6210 aa)
     
 
  0.557
Mettu_3967
KEGG- hoh-Hoch_6745 hypothetical protein (146 aa)
              0.553
Mettu_0835
PFAM- Type III secretion exporter; KEGG- hch-HCH_04371 flagellar protein FhlB cytoplasmic domain-containing protein (94 aa)
      
        0.543
Mettu_3921
PFAM- 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG- rce-RC1_1947 3-hydroxyacyl-CoA dehydrogenase, putative (779 aa)
        
  0.542
Mettu_1053
PFAM- LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG- LysR family transcriptional regulator (307 aa)
    
   
  0.468
Mettu_3740
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family (1032 aa)
       
  0.462
Mettu_2941
PFAM- LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG- cps-CPS_1769 LysR family transcriptional regulator (297 aa)
    
   
  0.445
Mettu_3968
Cytochrome b561; KEGG- alv-Alvin_0021 cytochrome b561 (184 aa)
 
          0.409
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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