• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_3989 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_3989" - KEGG: dps:DP0391 hypothetical protein in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_3989KEGG- dps-DP0391 hypothetical protein (227 aa)    
Predicted Functional Partners:
Mettu_3990
PFAM- Acriflavin resistance protein; KEGG- mca-MCA0079 AcrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family (1026 aa)
              0.845
Mettu_3841
Acyl-(Acyl-carrier-protein)--phospholipid O-acyltransferase; PFAM- AMP-dependent synthetase/ligase; Phospholipid/glycerol acyltransferase; KEGG- nhl-Nhal_2321 AMP-dependent synthetase and ligase; SMART- Phospholipid/glycerol acyltransferase (713 aa)
   
  0.767
Mettu_2623
KEGG- gem-GM21_1856 hypothetical protein (304 aa)
   
 
  0.670
Mettu_3131
TIGRFAM- Amino acid adenylation; KEGG- ava-Ava_C0009 amino acid adenylation; PFAM- AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding (1768 aa)
       
    0.598
Mettu_3991
KEGG- nhl-Nhal_0642 hypothetical protein (127 aa)
              0.597
ileS
Isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (943 aa)
   
      0.554
serS
Serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (423 aa)
     
      0.552
fhs
HAMAP- Formate-tetrahydrofolate ligase, FTHFS; KEGG- mca-MCA2219 formate--tetrahydrofolate ligase; PFAM- Formate-tetrahydrofolate ligase, FTHFS; Belongs to the formate--tetrahydrofolate ligase family (557 aa)
       
      0.548
Mettu_3923
PFAM- Alpha/beta hydrolase fold-1; KEGG- dol-Dole_1932 esterase/lipase-like protein (780 aa)
   
  0.410
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (12%) [HD]