STRINGSTRING
Mettu_4008 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_4008" - Putative uncharacterized protein in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_4008Putative uncharacterized protein (214 aa)    
Predicted Functional Partners:
Mettu_4009
SNARE associated protein (223 aa)
 
          0.892
Mettu_4007
Radical SAM domain protein (323 aa)
 
          0.887
Mettu_4010
DoxX family protein (190 aa)
              0.773
Mettu_2673
Glycosyl transferase family 2 (229 aa)
 
          0.740
Mettu_3028
Dihydrolipoyl dehydrogenase (715 aa)
 
          0.571
Mettu_2671
Putative uncharacterized protein (215 aa)
 
          0.550
Mettu_4011
Putative uncharacterized protein (98 aa)
              0.492
Mettu_0123
Putative uncharacterized protein (528 aa)
   
          0.473
Mettu_3513
Polysaccharide biosynthesis protein (439 aa)
   
          0.439
Mettu_4014
RNA polymerase, sigma-24 subunit, ECF subfamily (198 aa)
 
          0.435
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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