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Mettu_4014 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_4014" - RNA polymerase, sigma-24 subunit, ECF subfamily in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_4014RNA polymerase, sigma-24 subunit, ECF subfamily (198 aa)    
Predicted Functional Partners:
Mettu_4013
Putative uncharacterized protein (66 aa)
              0.859
Mettu_4015
Arsenite methyltransferase (348 aa)
              0.825
Mettu_4012
Putative uncharacterized protein (73 aa)
              0.824
Mettu_4277
Anti-FecI sigma factor, FecR (325 aa)
   
 
  0.821
Mettu_2319
Anti-FecI sigma factor, FecR (326 aa)
   
 
  0.821
Mettu_1536
Anti-FecI sigma factor, FecR (319 aa)
   
 
  0.821
Mettu_4016
Phosphate transporter (369 aa)
              0.740
Mettu_1912
UPF0276 protein Mettu_1912 (283 aa)
 
          0.707
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1397 aa)
       
 
  0.690
Mettu_4010
DoxX family protein (190 aa)
 
          0.601
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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