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rtcB protein (Methylobacter tundripaludum) - STRING interaction network
"rtcB" - RNA-splicing ligase RtcB in Methylobacter tundripaludum
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rtcBRNA-splicing ligase RtcB (476 aa)    
Predicted Functional Partners:
Mettu_4019
Putative uncharacterized protein (144 aa)
 
    0.964
rtcA
RNA 3’-terminal phosphate cyclase ; Catalyzes the conversion of 3’-phosphate to a 2’,3’- cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps- (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3’P to produce RNA- N3’PP5’A; (C) and attack of the adjacent 2’-hydroxyl on the 3’- phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (353 aa)
 
   
  0.839
Mettu_0289
Capsule synthesis protein, CapA (385 aa)
 
        0.644
Mettu_0036
Class I peptide chain release factor (138 aa)
   
   
  0.593
prfB
Peptide chain release factor 2 ; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (365 aa)
   
        0.552
Mettu_3580
Methylthioadenosine phosphorylase (242 aa)
         
  0.535
deaD
Cold-shock DEAD box protein A ; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation (596 aa)
     
    0.535
rhlB
ATP-dependent RNA helicase RhlB ; DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA (451 aa)
     
    0.535
Mettu_1252
DEAD/DEAH box helicase domain protein (462 aa)
     
    0.535
Mettu_1250
DEAD/DEAH box helicase domain protein (419 aa)
     
    0.535
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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