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csrA protein (Methylobacter tundripaludum) - STRING interaction network
"csrA" - Carbon storage regulator homolog in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csrACarbon storage regulator homolog ; Could accelerate the degradation of some genes transcripts potentially through selective RNA binding (66 aa)    
Predicted Functional Partners:
rpoS
Sigma-38 (342 aa)
           
  0.831
fliA
Sigma-28 ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes (237 aa)
 
     
  0.812
Mettu_2074
Histidine kinase (1247 aa)
           
  0.809
Mettu_1214
Histidine kinase (966 aa)
           
  0.809
Mettu_0881
Response regulator receiver modulated diguanylate cyclase (1640 aa)
           
  0.809
Mettu_1274
Flagellin ; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (284 aa)
 
     
  0.801
Mettu_4356
Two component transcriptional regulator, LuxR family (214 aa)
           
  0.778
Mettu_4162
Two component transcriptional regulator, LuxR family (210 aa)
           
  0.778
Mettu_0508
Two component transcriptional regulator, LuxR family (214 aa)
           
  0.778
Mettu_4081
Aspartokinase (408 aa)
              0.742
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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