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csrA protein (Methylobacter tundripaludum) - STRING interaction network
"csrA" - Carbon storage regulator homolog in Methylobacter tundripaludum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
csrACarbon storage regulator homolog; Could accelerate the degradation of some genes transcripts potentially through selective RNA binding (66 aa)    
Predicted Functional Partners:
fliW
Flagellar assembly factor FliW; Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum (151 aa)
 
 
 
  0.919
Mettu_4081
Aspartokinase; KEGG- mca-MCA0390 aspartate kinase; TIGRFAM- Aspartate kinase region; Aspartate kinase, monofunctional class; PFAM- Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; Belongs to the aspartokinase family (408 aa)
       
  0.878
Mettu_1274
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (284 aa)
 
 
 
  0.863
Mettu_1236
KEGG- nhl-Nhal_2334 flagellar hook-associated protein 3; TIGRFAM- Flagellar hook-associated protein 3; PFAM- Flagellin, N-terminal; Belongs to the bacterial flagellin family (427 aa)
 
 
 
  0.738
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs (79 aa)
     
 
  0.692
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho’s RNA-dependent ATPase activity, and release of the mRNA from the DNA template (418 aa)
       
 
  0.666
Mettu_2167
KEGG- bgl-bglu_2g19890 CheA signal transduction histidine kinases (STHK); PFAM- ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART- ATP-binding region, ATPase-like; Signal transduction histidine kinase, phosphotransfer (Hpt) region; CheW-like protein (877 aa)
 
 
 
  0.649
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (345 aa)
         
  0.645
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (282 aa)
         
  0.629
rpoS
KEGG- alv-Alvin_0780 RNA polymerase sigma-70 subunit RpoD subfamily; TIGRFAM- RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM- RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4 (342 aa)
           
  0.618
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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