truB protein (Methylobacter tundripaludum) - STRING interaction network

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truB

tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (342 aa)

Predicted Functional Partners:

infB

0.987

Mettu_2829

0.967

rbfA

0.965

ksgA

0.959

guaA

0.943

truA

0.934

nusA

0.925

rpsO

0.922

ftsJ

0.918

Mettu_1560

0.906

Your Current Organism:

Methylobacter tundripaludum

NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mettu_1560	ftsJ	Mettu_1560	Mettu_3205	Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil	rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit	0.771
Mettu_1560	infB	Mettu_1560	Mettu_4212	Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil	Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	0.426
Mettu_1560	ksgA	Mettu_1560	Mettu_0023	Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil	S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	0.893
Mettu_1560	nusA	Mettu_1560	Mettu_4213	Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil	Transcription termination/antitermination protein NusA ; Participates in both transcription termination and antitermination	0.515
Mettu_1560	truA	Mettu_1560	Mettu_0885	Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil	tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs	0.828
Mettu_1560	truB	Mettu_1560	Mettu_4210	Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil	tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs	0.906
Mettu_2829	ftsJ	Mettu_2829	Mettu_3205	30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit	0.659
Mettu_2829	guaA	Mettu_2829	Mettu_1868	30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP	0.715
Mettu_2829	infB	Mettu_2829	Mettu_4212	30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex	0.788
Mettu_2829	ksgA	Mettu_2829	Mettu_0023	30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	0.924
Mettu_2829	nusA	Mettu_2829	Mettu_4213	30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	Transcription termination/antitermination protein NusA ; Participates in both transcription termination and antitermination	0.698
Mettu_2829	rpsO	Mettu_2829	Mettu_4209	30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	30S ribosomal protein S15 ; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome	0.858
Mettu_2829	truA	Mettu_2829	Mettu_0885	30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs	0.663
Mettu_2829	truB	Mettu_2829	Mettu_4210	30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs	0.967
ftsJ	Mettu_1560	Mettu_3205	Mettu_1560	rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit	Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil	0.771
ftsJ	Mettu_2829	Mettu_3205	Mettu_2829	rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit	30S ribosomal protein S1 ; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence	0.659
ftsJ	guaA	Mettu_3205	Mettu_1868	rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit	Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP	0.810
ftsJ	ksgA	Mettu_3205	Mettu_0023	rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit	S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	0.902
ftsJ	rpsO	Mettu_3205	Mettu_4209	rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit	30S ribosomal protein S15 ; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome	0.459
ftsJ	truA	Mettu_3205	Mettu_0885	rRNA (uridine-2’-O-)-methyltransferase ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit	tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs	0.717

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