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lptD protein (Methylobacter tundripaludum) - STRING interaction network
"lptD" - LPS-assembly protein LptD in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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Experiments
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[Homology]
Score
lptDLPS-assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane (985 aa)    
Predicted Functional Partners:
surA
Chaperone SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation (434 aa)
   
  0.977
lptE
LPS-assembly lipoprotein LptE; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane (165 aa)
 
 
  0.958
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm (184 aa)
 
  0.938
Mettu_2535
PFAM- Permease YjgP/YjgQ, predicted; KEGG- mca-MCA2100 hypothetical protein; overlaps another CDS with the same product name (383 aa)
 
  0.897
Mettu_2536
PFAM- Permease YjgP/YjgQ, predicted; KEGG- mca-MCA2101 hypothetical protein; overlaps another CDS with the same product name (357 aa)
 
  0.891
bamA
Outer membrane protein assembly factor BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (793 aa)
   
 
  0.865
bamD
Outer membrane protein assembly factor BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane (279 aa)
 
 
  0.820
Mettu_2482
Molybdate-transporting ATPase; PFAM- ABC transporter-like; KEGG- mca-MCA0742 ABC transporter, ATP-binding protein; SMART- ATPase, AAA+ type, core (261 aa)
       
  0.816
Mettu_4263
PFAM- Aminoglycoside phosphotransferase; KEGG- mca-MCA0600 hypothetical protein (332 aa)
 
          0.768
Mettu_4264
PFAM- Nucleotidyl transferase; KEGG- alv-Alvin_2540 nucleotidyl transferase (223 aa)
 
          0.760
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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