• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mettu_4279 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_4279" - Cyclic peptide transporter in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_4279Cyclic peptide transporter; SMART- ATPase, AAA+ type, core; TIGRFAM- Cyclic peptide transporter; KEGG- nde-NIDE2153 cyclic peptide transporter; PFAM- ABC transporter-like; ABC transporter, transmembrane region (549 aa)    
Predicted Functional Partners:
Mettu_3131
TIGRFAM- Amino acid adenylation; KEGG- ava-Ava_C0009 amino acid adenylation; PFAM- AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding (1768 aa)
 
     
  0.781
Mettu_3128
TIGRFAM- Amino acid adenylation; Non-ribosomal peptide synthase; KEGG- npu-Npun_R3023 amino acid adenylation domain-containing protein; PFAM- AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; overlaps another CDS with the same product name (2629 aa)
 
     
  0.742
Mettu_4281
PFAM- MbtH-like protein; KEGG- cyt-cce_3047 putative MbtH-like protein (73 aa)
 
     
  0.739
Mettu_3704
PFAM- MbtH-like protein; KEGG- ami-Amir_3672 MbtH domain protein (195 aa)
 
     
  0.735
Mettu_3127
TIGRFAM- Amino acid adenylation; KEGG- psb-Psyr_3722 amino acid adenylation; PFAM- AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; overlaps another CDS with the same product name (2224 aa)
 
     
  0.730
Mettu_3699
KEGG- npu-Npun_F2183 amino acid adenylation domain-containing protein; TIGRFAM- Amino acid adenylation; Non-ribosomal peptide synthase; PFAM- AMP-dependent synthetase/ligase; Condensation domain; Methyltransferase type 12; Phosphopantetheine-binding; overlaps another CDS with the same product name (4114 aa)
 
     
  0.728
Mettu_3126
TIGRFAM- Amino acid adenylation; KEGG- bbe-BBR47_39840 non-ribosomal synthetase; PFAM- AMP-dependent synthetase/ligase; Condensation domain; Methyltransferase type 12; Phosphopantetheine-binding; Thioesterase; overlaps another CDS with the same product name (1810 aa)
 
     
  0.725
Mettu_3129
TIGRFAM- Amino acid adenylation; KEGG- npu-Npun_CR072 amino acid adenylation domain-containing protein; PFAM- AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding (1134 aa)
 
     
  0.720
Mettu_3711
PFAM- MbtH-like protein; KEGG- sgr-SGR_452 putative MbtH-like protein (78 aa)
 
     
  0.693
Mettu_3700
TIGRFAM- Amino acid adenylation; KEGG- npu-Npun_R3425 beta-ketoacyl synthase; PFAM- AMP-dependent synthetase/ligase; Condensation domain; Phosphopantetheine-binding; Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; Acyl transferase; Polyketide synthase, KR; Thioesterase; overlaps another CDS with the same product name (2911 aa)
 
     
  0.675
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (7%) [HD]