STRINGSTRING
Mettu_4280 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_4280" - RNA polymerase, sigma-24 subunit, ECF subfamily in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_4280RNA polymerase, sigma-24 subunit, ECF subfamily (170 aa)    
Predicted Functional Partners:
Mettu_4277
Anti-FecI sigma factor, FecR (325 aa)
 
 
  0.959
Mettu_2319
Anti-FecI sigma factor, FecR (326 aa)
 
 
  0.958
Mettu_1536
Anti-FecI sigma factor, FecR (319 aa)
 
 
  0.958
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1397 aa)
       
 
  0.690
Mettu_4281
MbtH domain protein (73 aa)
   
        0.648
Mettu_2274
Serine O-acetyltransferase (311 aa)
 
          0.582
Mettu_2251
TonB-dependent receptor plug (915 aa)
   
        0.562
Mettu_3377
Positive regulator of sigma E, RseC/MucC (145 aa)
   
   
  0.530
Mettu_2301
Multi-sensor signal transduction histidine kinase (1161 aa)
     
 
  0.514
Mettu_3124
Propeptide PepSY amd peptidase M4 (397 aa)
   
        0.506
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum, M. tundripaludum SV96, Methylobacter, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum Wartiainen et al. 2006, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
Server load: low (17%) [HD]