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STRINGSTRING
Mettu_4393 protein (Methylobacter tundripaludum) - STRING interaction network
"Mettu_4393" - PFAM: Replication endonuclease, probable, phage in Methylobacter tundripaludum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mettu_4393PFAM- Replication endonuclease, probable, phage; KEGG- fbl-Fbal_3250 replication protein A (479 aa)    
Predicted Functional Partners:
Mettu_4392
annotation not available (158 aa)
              0.845
Mettu_0966
KEGG- hde-HDEF_2204 phage tail protein I; TIGRFAM- Phage tail protein I; PFAM- Phage tail protein I (187 aa)
   
          0.711
Mettu_0965
PFAM- Baseplate assembly protein J-like, predicted; KEGG- sit-TM1040_1291 baseplate J-like protein (318 aa)
   
          0.703
Mettu_0976
PFAM- Phage tail protein X; KEGG- spe-Spro_0873 tail X family protein (68 aa)
   
          0.700
Mettu_0963
KEGG- avn-Avin_37480 phage P2 baseplate assembly gpV-like protein; TIGRFAM- Phage-related baseplate assembly protein V; PFAM- Phage baseplate assembly protein V (187 aa)
   
          0.695
Mettu_0977
PFAM- Phage late control D; KEGG- wri-WRi_006910 tail protein D, putative (324 aa)
   
        0.688
Mettu_0970
KEGG- wol-WD0574 contractile tail tube protein; TIGRFAM- Phage major tail tube protein; PFAM- Phage major tail tube protein (167 aa)
   
          0.688
Mettu_0975
PFAM- Phage P2 GpU; KEGG- rsp-RSP_3357 putative phage tail protein U (130 aa)
   
        0.678
Mettu_0969
KEGG- dsa-Desal_2117 tail sheath protein (499 aa)
   
          0.675
Mettu_0964
GPW/gp25 family protein; PFAM- GPW/gp25; KEGG- sit-TM1040_1292 gpW/GP25 (112 aa)
   
          0.670
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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