STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADO48142.1PFAM: protein of unknown function DUF159; KEGG: kva:Kvar_1824 protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family. (223 aa)    
Predicted Functional Partners:
ADO46943.1
PFAM: integrase family protein; KEGG: eoh:ECO103_3814 putative integrase; Belongs to the 'phage' integrase family.
   
  
 0.467
ADO48087.1
KEGG: ypi:YpsIP31758_2250 phage integrase family site specific recombinase; manually curated; PFAM: integrase family protein; Belongs to the 'phage' integrase family.
   
  
 0.467
ADO50118.1
PFAM: integrase family protein; KEGG: sbc:SbBS512_E4814 site-specific recombinase, phage integrase family protein; Belongs to the 'phage' integrase family.
   
  
 0.467
xerD
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically exchanges t [...]
   
  
 0.462
Your Current Organism:
Enterobacter lignolyticus
NCBI taxonomy Id: 701347
Other names: Enterobacter lignolyticus SCF1, [. lignolyticus SCF1, [Enterobacter] lignolyticus SCF1
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