Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADO46281.1 | ADO47135.1 | Entcl_0002 | Entcl_0861 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Manually curated; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; KEGG: cko:CKO_04254 ssDNA exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1. | 0.535 |
| ADO46281.1 | ADO48407.1 | Entcl_0002 | Entcl_2153 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: slt:Slit_1763 hypothetical protein. | 0.980 |
| ADO46281.1 | ADO48838.1 | Entcl_0002 | Entcl_2588 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Manually curated; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: efe:EFER_1316 exonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | 0.896 |
| ADO46281.1 | ADO48942.1 | Entcl_0002 | Entcl_2694 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: kva:Kvar_3283 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: DNA polymerase III delta subunit. | 0.998 |
| ADO46281.1 | ADO49906.1 | Entcl_0002 | Entcl_3665 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: kpn:KPN_00059 DNA polymerase II; PFAM: DNA polymerase B region; DNA polymerase B exonuclease; SMART: DNA-directed DNA polymerase B. | 0.983 |
| ADO46281.1 | polA | Entcl_0002 | Entcl_4391 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.986 |
| ADO46281.1 | recA | Entcl_0002 | Entcl_1028 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.839 |
| ADO46281.1 | rnhB | Entcl_0002 | Entcl_3554 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.881 |
| ADO46281.1 | xni | Entcl_0002 | Entcl_0921 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 5'-3' exonuclease, SAM-fold domain protein; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. | 0.915 |
| ADO47135.1 | ADO46281.1 | Entcl_0861 | Entcl_0002 | Manually curated; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; KEGG: cko:CKO_04254 ssDNA exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.535 |
| ADO47135.1 | ADO48407.1 | Entcl_0861 | Entcl_2153 | Manually curated; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; KEGG: cko:CKO_04254 ssDNA exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1. | KEGG: slt:Slit_1763 hypothetical protein. | 0.576 |
| ADO47135.1 | polA | Entcl_0861 | Entcl_4391 | Manually curated; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; KEGG: cko:CKO_04254 ssDNA exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.518 |
| ADO47135.1 | recA | Entcl_0861 | Entcl_1028 | Manually curated; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; KEGG: cko:CKO_04254 ssDNA exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.408 |
| ADO47135.1 | rnhB | Entcl_0861 | Entcl_3554 | Manually curated; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; KEGG: cko:CKO_04254 ssDNA exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.434 |
| ADO48406.1 | ADO48407.1 | Entcl_2152 | Entcl_2153 | KEGG: cko:CKO_01685 hypothetical protein. | KEGG: slt:Slit_1763 hypothetical protein. | 0.520 |
| ADO48407.1 | ADO46281.1 | Entcl_2153 | Entcl_0002 | KEGG: slt:Slit_1763 hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.980 |
| ADO48407.1 | ADO47135.1 | Entcl_2153 | Entcl_0861 | KEGG: slt:Slit_1763 hypothetical protein. | Manually curated; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; KEGG: cko:CKO_04254 ssDNA exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1. | 0.576 |
| ADO48407.1 | ADO48406.1 | Entcl_2153 | Entcl_2152 | KEGG: slt:Slit_1763 hypothetical protein. | KEGG: cko:CKO_01685 hypothetical protein. | 0.520 |
| ADO48407.1 | ADO48838.1 | Entcl_2153 | Entcl_2588 | KEGG: slt:Slit_1763 hypothetical protein. | Manually curated; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; KEGG: efe:EFER_1316 exonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | 0.628 |
| ADO48407.1 | ADO48942.1 | Entcl_2153 | Entcl_2694 | KEGG: slt:Slit_1763 hypothetical protein. | KEGG: kva:Kvar_3283 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: DNA polymerase III delta subunit. | 0.861 |
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