STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUW_1093Stage II sporulation protein E; Identified by match to protein family HMM PF07228. (386 aa)    
Predicted Functional Partners:
CUW_1091
Conserved hypothetical protein.
 
     0.950
CUW_1092
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060.
 
     0.950
CUW_1528
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF04060.
 
     0.627
CUW_1532
Conserved hypothetical protein.
 
     0.593
CUW_1732
Putative sigma-E processing peptidase SpoIIGA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
   
  
 0.578
CUW_0017
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
    
   0.511
CUW_1527
Conserved hypothetical protein.
  
  
 0.469
CUW_1526
Conserved hypothetical protein.
  
     0.444
CUW_1567
CotJB family protein.
  
     0.434
CUW_1531
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF02518.
  
     0.420
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.