STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUW_1994Bacterial sugar transferase; Identified by match to protein family HMM PF02397. (211 aa)    
Predicted Functional Partners:
CUW_1993
Nucleotide sugar dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.
     
 0.700
CUW_1995
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
     
 0.680
CUW_1512
Identified by match to protein family HMM TIGR01007.
 
  
 0.551
CUW_1594
Putative membrane protein.
  
  
 0.519
CUW_2780
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.462
CUW_1511
Chain length determinant protein; Identified by match to protein family HMM PF02706.
  
  
 0.461
CUW_2674
CobQ/CobB/MinD/ParA nucleotide binding domain family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.455
CUW_0808
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
     
 0.441
CUW_1590
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
  
 0.426
CUW_2800
Glycosyltransferase, group 1 family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00534.
 
  
 0.422
Your Current Organism:
Turicibacter sanguinis
NCBI taxonomy Id: 702450
Other names: T. sanguinis PC909, Turicibacter sanguinis PC909, Turicibacter sanguinis str. PC909, Turicibacter sanguinis strain PC909, Turicibacter sp. PC909
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