STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilQType IV pilus biogenesis and competence protein pilQ precursor. (688 aa)    
Predicted Functional Partners:
SBT59800.1
Fimbrial assembly protein (PilN).
 
 
 0.996
SBT59802.1
Pilus assembly protein, PilP.
 
 
 0.995
SBT59799.1
Type IV pilus assembly protein PilM.
 
 
 0.988
SBT59801.1
Pilus assembly protein, PilO.
 
 
 0.985
SBT59889.1
Spore coat assembly protein SafA.
 
 
 
 0.960
epsF_2
Cholera toxin secretion protein epsF.
 
 
 
 0.869
fimA
Serogroup A1.
 
   
 0.819
epsE_2
Type II traffic warden ATPase.
 
 
 
 0.800
epsF_1
Cholera toxin secretion protein epsF.
 
 
 
 0.765
pilA
Strain PAK.
 
   
 0.763
Your Current Organism:
Plesiomonas shigelloides
NCBI taxonomy Id: 703
Other names: ATCC 14029, Aeromonas shigelloides, CCUG 410, CDC 3085-55, CIP 63.5, DSM 8224, Fergusonia shigelloides, LMG 4242, LMG:4242, NCCB 80007, NCIB 9242, NCIMB 9242, NCTC 10360, P. shigelloides, Pleisomonas shigelloides, Pseudomonas shigelloides
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