STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Q011N4_OSTTAtRNA wybutosine-synthesizing protein. (1020 aa)    
Predicted Functional Partners:
A0A090M2A7
Uncharacterized protein family UPF0434/Trm112.
   
 
 0.962
A0A096P9S0
Uncharacterized protein.
    
   0.960
A0A090M4W0
tRNA wybutosine-synthesis.
  
  
 0.894
A0A090LY97
(Uracil-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
  
 0.832
A0A096PA11
Leucine carboxyl methyltransferase 1 homolog; Involved in brassinosteroid (BR) signaling.
 
 
  
 0.810
A0A090M1A4
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
  
  
 0.794
A0A090N2W0
WD40 repeat.
   
  
 0.743
Q00XY3_OSTTA
Cysteine peptidase, cysteine active site; Belongs to the peptidase C1 family.
    
   0.742
A0A090M8F3
Pseudouridine synthase TruD, conserved site.
   
  
 0.734
A0A090M1Q3
tRNA (Guanine-N1-)-methyltransferase, eukaryotic.
   
  
 0.723
Your Current Organism:
Ostreococcus tauri
NCBI taxonomy Id: 70448
Other names: O. tauri
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