STRINGSTRING
PH0054 protein (Pyrococcus horikoshii) - STRING interaction network
"PH0054" - annotation not available in Pyrococcus horikoshii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0054annotation not available (328 aa)    
Predicted Functional Partners:
porB
annotation not available (334 aa)
         
    0.800
porA
annotation not available (398 aa)
         
    0.800
porD
annotation not available (108 aa)
         
    0.800
PH0857
Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine (394 aa)
         
  0.634
PH0055
annotation not available (103 aa)
              0.620
flpA
Fibrillarin-like rRNA/tRNA 2’-O-methyltransferase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2’-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA (227 aa)
              0.620
PH0053
annotation not available (404 aa)
              0.618
PH1627
annotation not available (346 aa)
         
  0.617
PH1406
annotation not available (440 aa)
         
  0.617
PH1889
annotation not available (533 aa)
            0.595
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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